I shaved mine. I like the clean lines down the side and trunk(shaved all the locks also). It is not a daily driver so I'm not as worried about issues. I will say that do not go cheap on the actuators, since it is the only way door will open. Can't stress that enough... Also when when welding in the patch panels take your time, the doors warp easy if too much heat.
I went with Bear Claw latches with the integrated pop solenoid as part of the latch assembly. As for a back up the easiest solution is just a cable release run to an inconspicuous place.