How do I get the wires into the trunk?
Pop up the bottom part of the rear seat, pretty simple to run through when you get that up
Where is the best place to go through?
You'll see when you pull up the rear seat
Where should I put the ground?
I usually try to make it as short as I can, scrape off any paint, make a good connection to clean metal. Most importantly, make sure it's nice and tight.
And how should I run my rca and power cables? On opposite sides or what?
I always run power and signal on opposite sides to minimize the introduction of noise.