I'm sure someone hacked it up and just left bare wires, some twisted some not. It might be wise to inspect about every inch of wiring that you can see, and if you're real lucky you can simply resplice some of them back together without having to add to it or start over. Adding extra ground straps is always a good idea though.
Haynes has a Tech Book (#10420) titled Automotive Electrical Manual, Workbench SA has Automotive Wiring and Electrical Systems (SA160), and those in conjunction with the diagrams provided by other members will get you going. If you see a wire that's not in a diagram just snap a pic and post it here- someone will know the answer. Not me, but someone.