The main thing people miss / forget is that the TPI is designed and based on the 305, with its small bore and puny ports. Remember this was at a time when you had to deal with ever-tightening emissions and most manufacturers were seriously looking at downgrading engine displacement and # of cylinders (not unlike today). The entire intake system (throttle body, main plenum, intake runners and lower intake) is small in terms of flow; I mean, why have something that has hella intake flow when it will only get strangled by the small port in the head and small valve. The runner length helps make up the hp deficit, making good torque, especially on the 350.
Again, since most guys/gals don't know this they just go straight to stroking it, completing head work w/ bigger valves, put in a hotter cam and are disappointed when the engine falls on its face. The intake can't keep up with the improved breathing capability of the long-block. It's similar to when folks over or under-carb their engine, or keep a restrictive exhaust, or have a nice engine package but have a crap-tastic ignition.
Driven's statements and article link were very good and makes that point. In the article they actually explained this achilles hill and "corrected" it by extrude honing and doing some porting work on the entire system as well as going to a larger throttle body. Honestly I would do that even if I wasn't going to stroke it to a 383. I was going to suggest trying to find aftermarket runners or have the ports / runners ported. Upping the injector size may help, as well as getting the ignition in order. The stock HEI gives up the ghost around 4500 ~ 4800, same rpm the intake runs out of breath.