If you measured the intake runner openings before you started working on them and compared that to the intake openings on the head you would see that the intake opening was already larger than the head. You already had a "step" in the air flow path.
UNGN is right, matched is better and bigger isn't always better. So unless you have enough cubic inches and engine internals to handle the extra flow from big port heads, you might want to do some figuring on runner size for the aluminum heads.
Your iron heads only have so much flow capacity. In this case visibly less than the intake. Aftermarket intakes have large runners to insure that they can fit most heads. By opening up the intake runners, you will have further reduced the velocity of the air/fuel mixture into the cylinders.
Those closed chamber heads you have shroud the intake valve and have a negative effect on cylinder filling, especially with the 2.02 valves. What you might want to do is gasket match the iron heads but keep the blend angle a little steep (moderate blend). This will help smooth the air flow but still allow the rest of the head runner to increase air/fuel velocity going into the cylinders. You could also do a full port job and because it is a 400ci, unshroud the intake valve by some minor (very minor) combustion chamber work around the edge of the intake valve.
If budget is a problem and time isn't, that might be a way to go.