i've added a hotter coil (accel super coil) a better muffler (i didnt even go with a cat back exhaust and i noticed a difference) you can go with a factory four barrel intake and carb or an aftermarket unit. you can use headers but the better ones are from hooker IMO but...they arent cheap so unless you're changing the cam and doing other stuff maybe the headers arent the right way to go. i also put in a lower temp thermostat, my 3.8 seems to enjoy cooler temps and will let me know when its too hot like during the summer. a high flowing cat wouldnt hurt either and i did that as well. the air filter is a given, paper ones dont work that well.
i have attempted to pep it up while being emissions legal (my county has since stopped emissions testing but one never knows when it will start up again).
later on (after i get antique tags put on it) i plan on going with a fresh 3.8 and stabbing in a better cam four bbl intake and carb (possibly aftermarket fuel injection like the holley command 950 TBI which is very flexible to use) possibly some headers (if i can get some ceramic coated) and maybe just one big exhaust pipe,up to 2 1/2 from the 2 inch, i really dont see a need to run dual exhaust on a 3.8 unless i'm going all out for racing or something and even then, its turn downs not dual exhaust.
thought about going with a turbo but i really dont want to, i want it fun but simple and a turbo would be just more parts waiting to break and screw up ruining the fun factor.
i have a factory 4 barrel intake from a 4.1 thats in a 82 GP LJ that is currently rotting in my driveway, i might use it but it needs a qjet and if i use that i have to may through the nose for an emissions legal one or wait for antique tags so i can run a regular qjet but then i have to ditch the computer crap and run a vacuum distributor instead. or i can use the holley command 950 TBI system which would let me us the computer controlled distrubutor saving me a little dough in the process.
at the least i want to later on use a better cam and a 4 barrel intake regardless of the fuel system i use. i have yet to find pistons tthat arent for a turbo...booo not all 3.8 owners have turbos!
my 3.8 has around 160,000 miles and runs nicely, the carb is giving me fits on cold starts though, i hate dualjets!