This is key. Also the pressure plate fingers may be taller than expected. Then there are three heights of clutch fork ball stud that screws into the bell housing.
View attachment 202577 Along with the right TOB you need the one that positions the fork right yet it does not hit the fork window in the housing. Right now I am using the adjustable stud because I modified my linkage geometry to get more throwout bearing travel.
View attachment 202578As for the lower push rod there are several kinds. I prefer the BBC style for strength
View attachment 202575but the regular type has a LOT more adjustment.
View attachment 202576The pedal spring is a tough one. I use a long thin spring like an old fashioned screen door used. I hook one end to the clutch pedal and the other I thread through all the wiring and crap to find something solid up behind the dash to hook it to. I think I used the steering column supports. Look at it this way- if everything is stock correct, then it should all fit and work perfectly. BUT- anything even slightly off will affect the way all this works. Then you can either substitute parts, or modify things to connive them to work together. Since you are assembling all this from scratch I think you are doing great. Even at my age I get stymied by things and have to get creative.