The caps have to go in the position they were machined in. If I were you I would pull the crank out. Then try each cap in each position checking for the best fit at the mating joint. Measure the bore of each with the cap torqued in place using the bore size of the known correct mains for reference. When you get them where you think they belong the re-install the crank with new bearings and check the rotation after each cap is torqued. If when all are torqued the crank spins free then you may have gotten lucky and the engine might live. But often the caps are so close to the same that it isn't possible to tell where they go. Good luck.