If you are referring to the third bolt being one of the torque convertor bolts those should only be installed once the transmission is fully bolted to the back of the engine block at that point the convertor should still spin feely and have a small gap between it and the flexplate.I cannot get the flywheel to turn again for install of the third bolt.
I noticed the transmission to block transition seems have a slightly larger gap on the passenger side. ( I have approximately a thread on the passenger side and 1/2 thread on the driver side. The gap disappears around the rest of the bell housing.) This bell housing is a dual pattern unit.
Sometimes the convertor can slide forward a little and unseat while attempting to install the trans/convertor assembly.
And definitely invest in flywheel turning tool it will make the job that much easier and safer and they are very affordable.