Current flows from the battery through the ignition switch /system, WITH TAHT MUCH Volt/amp output, it sounds like its an overload on that system, perhaps overheating if you will, the coil and components temporarily, and shutting it down as a result. It wasn't meant for that much voltage. Thing is as you start a vehicle up, the alternator will start out max charge and come down slowly, so if that thing is putting out this much while running, imagine what it is as it first starts up! there is defiantly an overload issue here, id dump that alternator and see how it runs with a normal amperage one before you go poking to hard. Good luck!!!