Oh man I hope I got this close to right... because taking it off is going to suck.
I started by stitch welding along some seams, adding a few spot welds, and closing up some gaps. Then ground it all down and shaped it, basically I had something to weld to or a slightly better structure.
Then I cut and formed some filler strips. I used two pieces on the C pillar to allow room for error. You can probably seem that the filler strips fold over into the window channel where it was previously stuffed with seam sealer and dumdum. This also (theoretically) aids structurally in resisting twist... at least that's my thinking. I shaped them with a point body hammer.
The magnet with the little metal sliver on it is my depth spacer to see the filler strips into the channel. Big D told me to keep it 1/16" below the surface... so I figured that was unprofessional enough. Next came the booger welds, I set my welder to it's lowest setting (to avoid warping stuff) and quenched them with compressed air. It was incredible how much contamination was still occuring in the welds despite everything being cleaned well and covered in weld-through primer. After than I put a fresh 80 grit flap disc on a grinder and tried to erase my shame. I grabbed the DA with an 80 grit pad and verified that it was all below the surface - seems to be.
Given that I am going to glass and fill this area I am not sure if I should need to chase every remaining gap along the filler strips? I'll leave it to public consultation on how to proceed.
The leading edge of the B pillar is too close to the factory "lead" filler - so I am just going to avoid it.
Lastly I am still contemplating WTF to do about these gaps at the back of the C pillars - it is filled with brazing rod and frankly in a giant PITA location. I might just yell at it until it changes it's attitude.