you can't use the holes...
from another forum
The engine mounts must be set in yourself, the goal is to get the engine level and centered relative to the drivetrain of the car. The first step is to get the car up on 4 jackstands. It doesn't need to be perfectly level, but it does need all 4 wheels up off the ground. Next, make some centering and levelling measurements:
Run a string from the center of the driveshaft mount on the diff to the midpoint of the front crossmember. Check the center by measuring at various points along the C-channel and frame. Measure carefully, because 1/8" off center here means you're going to have driveline vibrations. You really should have your transmission crossmember centered already for this to work, a G-force is ideal, but at the minimum make sure its mounting holes are well centered in the frame.
Next, place a level on top of the front frame rails and take a reading. In my case I read 1/4 bubble left. Confirm this reading by tanking ANOTHER measurement at the rear of the front frame rails (where the C-channel starts).
OK, we now know where the centerline of the car is, and we know what the level of the frame is.... now do a test fit! Bolt the engine mounts and frame pads to the engine and drop it in, you can "eyeball" the rough fit, checking that it will not hit the firewall, the dreaded heaterbox, and you'll still have enough room to get the oil filter off up front. Try and set the engine back as far as possible for performance and stability.
Now for the fine tuning. you'll have to pick the engine up a bit and try to slide it 1/4-1/16 around. Tape a straightedge to the harmonic balancer, centered and hanging down enough that you can see the straightedge and the string we tied up earlier. Next, place a level on the carb mount on the intake right to left, just like it was sitting on the frame before. Your goal is now to get the level to read the same as it did on the frame earlier, and to have the straightedge and the string line up. Once that is done, check that the entire driveline follows your centering string, harmonic balancer, transmission mount point, driveshaft, and diff.
That's it! The engine should now be levelled right to left and centered in the frame. You've just done pretty much what the engineers at the factory did, with home materials.
Now just mark the pads: Get out some spray paint and coat all around the frame pads. Pull the engine/transmission and you'll see a perfect negative of the pads to give you a pattern to drill out. Drill the holes a touch large, you'll tend to be slightly off when you put everything back in. Also, it's a good idea to leave the pad bolts a bit loose since you'll want to fine tune the fit again once you get the engine/transmission back in.