-Remove the metal perimeter trim.
-Remove rear interior pieces to get at your side windows and remove them.
-Peel off the top, then drill out the rivets holding the large plastic retainer around the rear window.
At this point all the vinyl should come off. You can deal with the glue in many ways... sanding, acetone, take your pick.
I was lucky, the glue was all dried up underneath the top and I just scrubbed it off with a rag, no solvent. When you're taking out your side windows, have a rag ready to grab some of the stringy bits of sealer when you push/pull out your windows.
You may not need non-vinyl side windows either. My stock ones fit with zero gap even without the top there.
-Twist off the clip mounting studs with vise grips. You can grind them off, but it's easier and safer to just twist 'em. No risk of grinder spatter on the glass or damaging paint outside the vinyl top area.
Now you're left with a problem... You have rivet holes around the perimeter of your rear window that need to be taken care of, and you have no mounting studs on the inside lip of your rear window to mount clips for the non-vinyl rear window trim.
Your rear filler panel (between the trunk and the rear window) is also not correct.
You may also have some body work to do where the roof joins to the quarter panel, depending on what kind of condition the filler is in there.
-Use butyl tape to reseal your side windows and put them back in (after doing the body work).
-AuVeCo #9877 screws will give you the trim clip mounting studs around the inside lip of the rear window. Use some sealant to prevent leaks.
-The holes around the rear window... your choice.
-Get a rear filler panel from a non-vinyl car, or possibly make your existing one work with some welding/bodywork.
-Get the rear window trim and clips from a non-vinyl car and install.
The two things that I always see missing with "how to remove vinyl top" threads is the lack of mentioning the rivet holes around the rear window that need to be taken care of, and the lack of trim clip mounting studs around the rear window to mount the new(used) non-vinyl rear window trim to... Why are these aspects left out the majority of the time? They're probably the hardest part of the conversion...