Sounds like you need to check the brown wire for continuity and resistance.
In your application, the brown wire tells the alternator that there is a load, and that the alt needs to supply current. If the wire is not capable of relaying that to the alternator, you are going to have charging issues.
I would use a DVOM to check between the alternator plug and ignition switch, and have a helper move the harness while testing. I think there are problems in that wire...perhaps it has broken strands in it that cannot handle the current load, or are intermittently losing contact.
In your application, the brown wire tells the alternator that there is a load, and that the alt needs to supply current. If the wire is not capable of relaying that to the alternator, you are going to have charging issues.
I would use a DVOM to check between the alternator plug and ignition switch, and have a helper move the harness while testing. I think there are problems in that wire...perhaps it has broken strands in it that cannot handle the current load, or are intermittently losing contact.